The 2nz fe ecu cannot drive the 3 relay system as it works very differently than the 2 relay circuit. As the 3 relay system requires 2 fans to work and takes 12v -ve input to hold them off and the whole setup is controlled by an ac high pressure switch and a 1 wire thermoswitch.
The e120 with 2nz fe had 2 relays and a step down resistor, one relay controls the positive side of circuit and the other controls the ground side in which it can select low or high speed as it passes through the resistor or goes direct.