Sir, the rims are of the size 13'' factory fitted. When Honda launched this model, they installed 175/70/13 inch tyres with wheel covers on the rims of all EXi's. Yeah, i agree with you they seems much smaller considering the size of the car but that mistake has been done by Honda Atlas. I have only tried it to keep it in stock condition otherwise I would have got many tickets on motorway for overspeeding.
Secondly, Jack, Pana and all others accessories are also included along with the CNG kit and 55l cylinder.