Lets attack your problem, Two batteries of 180 AH are connected to 1000 W UPS so according to the above statement they can be discharged at (AH rating /10= 18 Amperes ) , (AH/6 = 30 Amperes), (AH/4= 45), (AH/3=60 Amperes).
If you would have studied about transformers then you would agree
VI (AC) = VI (DC)
And since you UPS is of 1000 W
P (AC) =VI
We know, ideally V should be 220 Volts
1000=220 * I , => I= 4.54 Amperes
But AC voltage is Stepped down using transformer and then converted into DC voltage which is supplied to the battery.
So here if V=24 Volts and P= 1000 W then this implies that I=P/24 , I= 41.66 Amperes.
So if you will try to extract current more then I= 41.66 Amperes from your UPS then ideally it should have a protection switch which should immediately turn off the UPS.
Conclusion:
1) Now what is the recommended AH rating of the battery specified for your specific UPS
2) Probably you are using battery with high AH rating then specified by the user Manual.
3) Referring to the last paragraph, you need to cross check your facts.
4) Only thing 1000 W UPS says is if you will try to extract or discharge your batteries at rate more then I(DC)=41.66 Amperes then UPS will shut down immediately as it is not meant to support such a high current.
Chill as it does not matter in your case, probably you need to check the maximum charging current of your UPS as I believe that it would take more time for your UPS to charge 180 AH battery.