ok vajih, i am doing a similar swap..
the car under question is corolla 96 jdm, with 4efe and auto tranny(4efe and 2e have similar mount locations.
so we opted for 5afe...
and manual tranny
the cast
well 45k for the engine tranny and everything needed to swap from auto to manual.
add another 10k for the labour and other small bits...
i think it wil cost you the same also, reason well we have the disadvantage of having auto hence the added cost of going to manual, but the advantage that the car is already efi(4efe), hence the efi relays and the pump and every thing is already in place.....
you are most welcome to see/drive the car , to make a better decision