Please head over to soundvalley in pindi saddar. Talk to the owner Shehryar that I (Mustafa) sent you. He'll tune the setup for you.
The problem is, you're running the speakers from the stock headunit. If you had upgraded front speakers, you could have easily connected those to the amp too and that way, atleast the front stage would have matched the sub and you wouldn't feel the mids and highs getting drowned by the sub. The built in amps in stock headunits are not really that competent and factory speakers are pretty much useless when you push them since they're made of really thin flimsy paper with miniature sized magnets
He'll also do the sound deadening for you. I'd suggest you install the Caliber sheets which cost around 2500 each. 1 sheet just for the trunk lid is more than enough but you can go with 2 if you really want to isolate it, including the black inner padding