The 5MT, transfer case and rear diff (based on the shop's hunch) on my Suzuki Jimny was taken apart and put back together a little while ago. I had it opened up to see why my car drives alright in 2WD, but makes horrible "bag of bolts" noises in 4WD-Hi - the teardown and parts didn't make the noise in 4WD go away.
Does anyone have any ideas on where to start? The transmission shop didn't find anything wrong with my gearbox, just changed two synchronizer rings, the input and output shaft bearings, some seals, and put it back together. I also replaced my rusting clutch cable, got a new clutch disc and pressure plate, and new pilot/throwout bearings.
Rear diff was "OK" too, and transfer case "bhi OK hay." Just changed the transfer case input/output shaft bearings and hardened rubber seals.
U-joints and yokes for all three driveshafts, front and rear wheel bearings were replaced by another shop before this. They're stumped too.