your car keep alive memory (KAM) has been reset, you need to wait for the emmissions drivecycle to complete so the fuel consumption can recalibrate itself.
for the auto window - roll it up fully and hold the button for 5 seconds like that, the auto function will be learned after this.
btw - any decent workshop can replace your battery without disconnecting power to the car, if you choose to visit to a cheapo battery shop, they will disconnect the terminals without backup power and make the car lose all memory settings.