A cng vehicle requires a monthly visit to the mechanic, I remember that my khyber used to go ever second weekend to the mechanic, but that was because it was an going project, but if your car is giving issues on cng, service the kit, the cylinder, check the advance and get it properly tuned.
Always start from cold on petrol, and switch to cng when the temperature moves a light bit, this was the formula that kept my car from having issues on cng.