Hi Sammad_kh,
Good luck with the engine swap. I recommend you must go for the brake upgrade with the swap. This includes front rotor/Piston upgrade and Rear wheel disc brakes will be a better option too. With this you have to change the master cylinder and the servo too. Master cylinder is required for pressure and installing the double layer servo will reduce your braking effort.
So it is necessary for the brakes to be upgraded. I have front brakes from a Civic type R which can be fixed in civic97. I will fix them in my civic soon.
For any clarification, please feel free to contact me.