Dear Mzkhan .... this is really very difficult question to answer.
Well actually all of the three cars you took an option are different because honda is a honda having different kind of a drive and specifications where as a new corolla 1.3 has new shape and different drive wheras the old shape corolla Gli 1.6 will be completely different in shape and power. The current shape corolla however has a 1.6 Dual VVTI tehnology which i doubt will be available in upcoming shape 1300cc car. Now it completely depends on your choice of shape and driving habits, but i can help you in matching one with your requirements.
If you are living in a posh area in any city with no requirements to visit village or out of city drives then city is recommended which gives you an additional advantage of more horse power. City normally gives a milage of 10-11 km/l in city with normal foot.
On the other hand if you need a car with more power with good fuel average having good ground clearance in rural areas even if you have 5 passengers in the car then 1.6gli with dual vvti is a preferred option. Despite of being a 1600cc car it will give you a milage between 12-14 km/l
Third option is a new shape corolla having 1300cc engine but at the moment i cant give any feed back because i am not sure whether it has a dual VVTI engine or not and also dont have any idea wither it has 5 forward gears or 4 gears. If they introduce this new shape with 5 speed CVT gear with dual vvti then you can go for it without any second thought. you can expect between 13-15 km/l with these specs.
Difference between 4 speed AT and 5 speed At is that 5 speed will give you more smooth drive at low rpm eventually resulting in better fuel milage than 4 speed car.
From resale point of you the new corolla with 1300 dual vvti 5 speed will have the best resale followed by honda city and in the last 1600cc gli.